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We observed similar binding patterns for the mammalian influenza (H1N1) viruses, with the exception that the pandemic strains had reduced binding to chicken erythrocytes.
Moreover, pairwise correlation analysis of all genome-wide binding profiles followed by hierarchical clustering demonstrated that with the exception of CTCF, binding patterns for the TFs clustered by cell type rather than the paired HPC7/mast cell datasets for the same TF (Fig 2C).
We next analyzed our ChIP-seq data sets to identify the core transcriptional network that characterizes the cellular identity of t(8 21) cells by determining overrepresented combinatorial binding patterns for the transcription factors RUNX1/ETO, C/EBPα, HEB, LMO2, PU.1, and RUNX1 (Tijssen et al., 2011).
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We can take the binding pattern for the instantiation of a component, and in the binding process, two reactants are combined to form a complex reactant.
To identify lectins recognizing glycoproteins on the cell surface, we first used the lectin arrays to determine the lectin-binding patterns for the hydrophobic protein fraction.
This conformational heterogeneity in both RNAs in the Rev-monomer-bound species suggests similar binding patterns for both the RNAs.
We show significantly different (p<0.01) ChIP-Chip binding patterns for factors at the two groups of genes.
Comparison of peak sets identified using ChIP-chip and ChIP-seq for H3K9me3, SETDB1, and KAP1 and a comparison of the binding patterns for H3K9me3, SETDB1, and KAP1 using the different platforms is shown in Supplementary Figure S6.
In order to understand the difference between 3' UTR and 5' UTR binding patterns for seedless sites, we analyzed the weights learned by our model for the two regions.
The most striking feature in the comparative CoMPP data was a marked difference in the binding patterns for mAb LM15 in NaOH extracts.
The binding patterns for H-THK5117 nonlynly showed significant differences between AD patients and controls, but also appeared to reflect the different tau pathology as well as clinical symptoms of the patients.
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