Sentence examples for binding motifs were predicted from inspiring English sources

(C) MalR, CcpA, and Fnr binding motifs were predicted from the pathways.

DNA binding motifs were predicted by PlantCARE [ 60].

Instances of transcription factor binding motifs were predicted for all the vertebrate nucleotide distribution matrices of the Matrix Family Library version 6.2 using the program MatInspector [ 56] (Genomatix).

Potential Nuclear Receptor (NR) binding motifs were predicted to control the temporal expression profile of a gene set with increased expression levels during mid metamorphosis.

Using a binding energy based position weight matrix of Ss-LrpB [ 32], binding motifs were predicted over (i) the entire S. solfataricus P2 genome sequence, (ii) the genomic regions comprising 200 bp upstream of the ORF start, and (iii) the ChIP-enriched regions.

Transcription factor binding motifs were predicted in the 200 bp promoter region located 5' to the predicted platypus α- and β-like genes and GBY by rVista 2.0 [ 67] using user-defined consensus sequences for 'CACCC'CAATAAT'TATAATA', GATA1 ('WGATAR' [ 51]) and EKLF ('NGNGTGGGN' [ 51]).

In total, 68,000 OCRs were identified, and a number of TF-binding motifs were predicted.

Several protein-binding motifs were predicted that were mainly located in the first 200 amino acids of STK35L1 (Table S1).

15, 18, 19 Human Hpa peptides with HLA-A2-binding motifs were predicted using a bioinformatics method described previously.

Four most probable DnaK-binding motifs were predicted, and out of which except aa 128 134, other three are excluded by our deletion mutation experiments.

For example, PDZ-binding motifs are predicted for Jagged-1, Delta1, and Delta-4, but not for Jagged-2 and Delta-3; SH2-binding motifs are predicted for Jagged-1, Delta-1, and Delta-3, but not for Jagged-2 and Delta-4.