Sentence examples for binding motifs using a from inspiring English sources

The ant algorithm offers an efficient, reproducible procedure to predict a role of individual transcription-factor binding motifs using a unique definition of artificial ants.

Peak-motifs facilitates the discovery of binding motifs using a combination of several algorithms at a time, and it detects not only the strongest motif but also secondary ones, providing valuable information concerning cofactors, and mechanism of function for TFs (88).

Q9-PBM analysis, which is a powerful and rapid method for the identification of putative functional cis-regulatory elements, allows for the accurate quantification of the binding affinities of some transcription factor binding motifs using all possible 9-mer combinations of probes (Kim et al. 2009).

By contrast, the chromodomain comprises three antiparallel extended β-strands reinforced by a cross-strand helix that forms a methylated chromatin-binding motif using an aromatic cage [ 12].

We independently searched for binding motifs using i- cisTarget, a method that identifies cis-regulatory modules (CRMs) [ 27] by ranking conserved regions in the Drosophila genome.

The sequence of the 5' region of SPP1 was analyzed in silico for identification of transcription factors' recognized DNA binding motifs using the software MOTIF Search with a cut off score of 85.

The ant algorithm is designed to predict a set of transcription-factor binding motifs using array-derived gene expression data.

We have developed a general strategy for determining such ligand binding motifs using low temperature NMR structures of peptides with the desired receptor binding properties.

The members of the stars were assigned to one of 15 groups according to the cluster containing the star, which were profiled for overrepresented TRANSFAC binding motifs using GATHER [95]. Figure 14 shows the complete profiles for the 15 groups.

AP-2α promoter analysis for consensus transcription factor binding motifs using Genomatix software revealed the presence of three previously unidentified, putative CRE-like sites at positions −1,450 bp (ACTTAAAA), −1,132 bp (ACACGTCT) and −962 bp (AAGTAACC) of the proximal AP-2α promoter region (Figure 3B - Schematic representation).

The peak sequences are analyzed for enrichment of transcription factor binding motifs using MEME-ChIP [ 15].