Sentence examples for binding motifs derived from from inspiring English sources

This program was used to search for common TF binding motifs, derived from postion based matrices from the TRANSFACR database.

Ellison and Bachtrog had previously found that the binding motifs derived from transposable elements on the neo-X chromosome are suboptimal (Ellison and Bachtrog, 2013).

We identified TF-mediated transcriptional modules using our method as well as the three other methods, based on the same set of data of microarray (from both cell cycle and stress response), ChIP-chip and TF binding motifs derived from the yeast (see Section 2.3).

We next searched the 4679 fooprints identified at q-value <0.05 for sequences that match the TF binding motifs derived from in vivo ChIP-Chip experiments by MacIsaac et al. (2006) and those derived from in vitro protein-binding microarray (PBM) experiments by Zhu et al. (2009).

Previously, we developed ArcA-binding weight matrices using sequences containing an ArcA binding motif derived from transcriptional profiling and EMSA [13], [26].

TALENs 1,2,3: transcription activator-like effector nucleases (TALENs) are restriction enzymes generated by fusing a DNA-cleavage domain and a domain of a collection of nucleotide-binding motifs derived from TALE proteins.

Suggestions: It would have been more useful to start with ChIP-seq datasets for TFs that have known motifs (derived from protein-binding microarray data, for example), and then evaluate the web tools on their ability to recover the known motifs.

Moreover, we compared our motif against known microRNA binding sites with the help of Amadeus' [37] supplementary compendium of target motifs derived from mirBase [4].

Decorative motifs derived from earlier structural and symbolic forms are innumerable and universal.

We also included motifs derived from a recent analysis of ENCODE ChIP-Seq datasets [47,48], as well as one study that systematically investigated human TF binding preferences using high-throughput SELEX technology [49] (Additional file 2).

The pulpit in the church of San Miguel de Velasco features motifs derived from local vegetation.