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Vast majority of G-quadruplex binding molecules have been designed and synthesized.
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It was proposed that mosquitocidal Cry toxins share a similar mechanism of action with Cry1A toxins, that are active against lepidopteran insect pests, since similar Cry-binding molecules have been identified in mosquitoes, including cadherin [15], [16], aminopeptidase [17], [18], and alkaline phosphatase [19].
Recent data suggest that coding and noncoding RNAs can regulate one another through their ability to compete for miRNA binding; these molecules have been termed competing endogenous RNA (ceRNA, Salmena et al., 2011).
To understand peptide selection by MHC class I molecules on a molecular level, the folding, assembly, and peptide binding of class I molecules have been intensely investigated in recent years.
Stimulus-driven molecular level conformational change and subsequent control over the binding affinity of guest molecules have been used to regulate anion concentration in solution.
Although peptides binding to MHC class II molecules have been suggested to be 12 25 amino acids in length, the core sites anchored to MHC class II molecules are sufficient even at a length of about nine amino acids (Rammensee et al, 1995).
Additional binding sites for phospholipids and other hydrophobic molecules have been suggested to be buried within a membrane protein, at protein protein interfaces in oligomeric membrane proteins, or between transmembrane α-helices; these sites have been termed nonannular sites to distinguish them from the annular lipid binding sites.
The p53-MDM-2 interaction has been extensively studied and small molecules have been created that disrupt their binding [ 45].
No organic molecules have been detected.
The stability of lipid binding to CD1d molecules has been related to the length of the hydrocarbon chains and the manner in which they fill the binding groove, with longer chains that fit well into the andand C' pockets of human CD1d providing for increased half-lives of association [11].
The binding mode of our molecules has been investigated using the recently published crystal structure of the complex of full-length integrase from the prototype foamy virus in complex with its cognate DNA (PFV-IN/DNA).
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