Sentence examples for binding intervals using the from inspiring English sources

We examined the overall genomic distribution of the Dichaete core binding intervals, using the centre coordinate of each interval as an approximation of the Dichaete binding site.

The PWMs were also used to scan multiple alignments of both four-way conserved and unique D. melanogaster Dichaete-Dam binding intervals using matrix-scan from RSAT, with the pre-compiled Drosophila background file and with the cutoff for reporting matches set to a PWM weight-score of > = 4 and a p-value of < 0.0001.

We assessed enrichment for know transcription factor binding motifs within the 1% FDR binding intervals using i- cisTarget [ 37] and identified a Vielfaltig motif (Vfl; E-score = 6.2) [ 38] followed by a series of Sox binding motifs (E-scores from 4.5 to 5.1), suggesting these DamID data identify bona fide Dichaete genomic occupancy.

These binding intervals were used for further analysis.

In this scheme, parameter intervals and decision-making target intervals are determined using the interval analysis method.

The basic difficulty scholars face lies in determining the intervals used in each of the ragas.

The metal binding capability was evaluated using the binding energy.

Confidence intervals are calculated using the Clopper Pearson interval.

FIMO was used to search for matches to each PWM in all binding intervals, and the resulting hits were used to calculate the average number of motifs per binding interval [ 90].

Transcription factor (TF -binding regions were exTF -bindingng the filteregionslatory_feature_type_name" set to "TF binding site".

To make a prediction for binding affinity, we use the median of the interval.