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We show that such plots can highlight the similarity between binding sites derived from different proteins.
Inspection of binding interactions shows that the two putative binding modes derived from our study are reasonable.
Similarity between potential binding sites derived from different protein targets, cationic trypsin and prothrombin, is highlighted in red.
The Grb2-specific Tpr-Met variant (TM-Grb2) contains the Grb2 binding site derived from EGFR.
In contrast, the single binding fragments derived from llama antibodies, often called "nanobodies", are much smaller.
Third, the ztz240-KCNQ2 binding model derived from the docking simulation was further optimized by MD simulation.
CD-epitope cores (9-mer binding cores) derived from γ-gliadins.
Recombinant DI inhibits the binding of antibodies derived from APS patients to β2GPI in ELISA binding assay [ 25].
Biocomposites are typically formed by binding natural fibers derived from plants or cellulose using organic binders.
A considerable amount of DNA binding proteins are derived from transposases encoded by DNA transposons [6].
Probability measures PΔG,IF of specific interfaces were derived from the gain in solvation energy upon complexation, with PΔG,IF > 0.5 pointing to hydrophilic/unspecific and PΔG,IF < 0.5 to hydrophobic/specific interfaces.
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