Sentence examples for binding implemented in the from inspiring English sources

To calculate the potential to be bound by Leu3, we scored the upstream sequences of all open reading frames (ORFs) in yeast using an equilibrium model for transcription factor binding, implemented in the program GOMER [ 8], and a position weight matrix (PWM) that we previously defined based on equilibrium dissociation constants for a large number of motif variants [ 9].

We then re-analyzed the families of data sets in the context of global analysis, employing a proton linkage binding model implemented in the global data analysis platform SEDPHAT, and examined the information content of all data sets by a detailed statistical error analysis of the parameter estimates.

We can now use the search functionality to verify the binding constraints implemented in the EGFR model.

The proposal of a dedicated mechanism raises the question of how visuomotor binding is implemented in the nervous system.

In this work, we have docked this series of peptidomimetics into the TR binding site, using the FlexX algorithm as implemented in the Sybyl program, in order to access the binding mode of this class of compounds in the target enzyme.

The genomic sequences of the human homologs of the differentially expressed genes were selected, and regions between position 500 upstream and 100 downstream of the transcription start site were searched for putative transcription factor binding sites (TFBS) using F-match implemented in the Explain Analysis System (Biobase GmbH, Wolfenbüttel, Germany) [ 29, 30].

In this work, we calculated protein-ligand binding energies for urokinase by the PM7 [ 50] parameterization method, implemented in the MOPAC package.

The MM-PBSA approach implemented in the Amber8 program was used to calculate the relative binding free energies of ligands to the TIR1 protein.

The new approach has been implemented in the BindN-RF web server for online prediction of DNA-binding residues in protein sequences.

Reactions implemented in the model.

In 2005, the orchard-based conservation with the legal binding was implemented in Shenzhen to mitigate the ecological threats from forest destruction and to protect the ecological diversity.