Sentence examples for binding geometry as the from inspiring English sources

Also P3 could be changed to Gln with no drastic change in the binding geometry as the glutamine side chain amide is able to engage the side chain of Gln192 (similar to P3 Glu).

This redesign endeavor altered the metal binding geometry as well as the substrate-binding pocket, yet both glyoxalase II and metallo-β-lactamase enzymes contain binuclear metal ions essential to the hydrolysis reaction.

The prediction of possible binding geometries as well as ranking of putative protein-ligand complexes according their binding affinities is the intention of so called molecular docking approaches.

On the basis of the difference in substrate binding geometry between the FAD-dependent HNL from almond and the related oxidases, we can rationalize why the HNL does not act as an oxidase.

Differences in the overall strength of the decay in fluorescence intensity indicate slightly different binding geometry for the four GAGs.

Notably, this structure revealed the active-site geometry at the catalytic site containing 4c Co II Cbl species (the "closed" conformation), as well as the binding geometry of pentacoordinate (5c) Co II Cbl prior to enzyme activation (the "open" conformation).

New molecules are docked directly into the binding site, with their highest scoring poses serving as the prediction of binding geometry and the corresponding score being the predicted affinity.

It achieved a putative binding geometry with Aβ1-40 peptide by the computational chemistry modeling and reduced Zn II -induced Aβ1-40 aggregation in vitro as determined by turbidometry.

Through superimposition of ligand and protein orientational tensors we describe the binding geometry of alpha-methyl mannose bound to mannose-binding protein.

The same formula, equation (1), is used for Bragg Brentano focusing geometry as well as the Debye Scherrer geometry; however, this does use an assumption that alters the relative intensities for the two geometries, but it is a small effect.

The binding geometry implicates Arg464, a hitherto unheralded residue, as being important for D6 recognition.