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A recent study suggests that the globular domains of individual H1 subtypes might have distinct binding geometries within the nucleosome in unperturbed chromatin [68].
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This "sharper" surface defines the possible binding geometry of the ligand more, than in the case of Gasteiger charges.
Differences in the overall strength of the decay in fluorescence intensity indicate slightly different binding geometry for the four GAGs.
Similar binding geometries are clustered together within a valley surrounded by mountains.
The structural characterization of binding geometries is therefore of interest as a basis for the construction of mimetics that can mediate the effects of abnormal immune response.
The PLP binding geometries of CysM and CysK are very similar.
The prediction of possible binding geometries as well as ranking of putative protein-ligand complexes according their binding affinities is the intention of so called molecular docking approaches.
The analysis includes the effect of an external negative electric field on adsorption characteristics such as binding energies, binding geometries, charge distribution and vibrational frequencies, both on CO and OH individually and in co-adsorbed geometries.
(C ) Comparison of filament arrangements and geometries within the dome-like structures (left panel) and ring-like structures (right panel).
Notably, this structure revealed the active-site geometry at the catalytic site containing 4c Co II Cbl species (the "closed" conformation), as well as the binding geometry of pentacoordinate (5c) Co II Cbl prior to enzyme activation (the "open" conformation).
Optimization of the binding geometry was performed with RosettaDock with distance constraints.
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