Sentence examples for binding database from inspiring English sources

The model was then employed as 3D search query to screen against public compound libraries (Asinex, TOSLab, Maybride and Binding database) in-order to identify a new scaffold.

Analysis of the binding database for existing clinical and experimental inhibitors has allowed us to address the following questions in a quantitative fashion: (1) Is there an optimal binding affinity?

To use the benefits from structure comparison, structures of proteins in experimental ligand binding database are modeled.

Experimentally validated kinase actives were compiled from the ChEMBL compound database, hereafter referred to as the kinase binding database (KBD).

Our observations suggest several models for PPARγ/RXR function that can now be tested using the comprehensive binding database that we are providing.

In future, we will include more drug-target information from multiple data sources such as the binding database (binding DB) [ 38], therapeutic targets database (TTD) [ 39], and other drug-target centered databases.

We searched the literature and on-line binding databases (BIND, PPID) to identify proteins that might bridge the gaps (Fig. 4Aiii).

FINDSITEcomb is the combination of FINDSITEfilt that uses holo PDB structures as templates and FINDSITEX that utilizes two independent ligand binding databases.

TF-DNA binding databases typically provide information in the form of "the number of times a TF has been observed to bind a given sequence".

In particular, we demonstrate how an artificial neural network model of TAP transport was used to mine a HLA-binding database so as to identify HLA-binding peptides transported by TAP.

Second, we also ran rps-BLAST against a database of PSSMs (n = 24,378) derived from expanding all of the sequences contained in the original 539 PSSMs, using PSI-BLAST (integral lipid-binding database, ILB DB) (see Methods).