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The DPA1*0103/DPB1*0201 binding data were obtained from Ref. [46] and included known epitopes as well as a set of overlapping peptides spanning Phleum pratense antigens.
TF binding data were obtained from (Gerstein et al. 2010).
All small RNA, CTCF binding and RNAPII binding data were obtained from publicly available sources and are listed in detail in Additional file 1, Table S1.
CB1 and CB2 radioligand binding data were obtained using National Institute of Mental Health NIMH Psychoactive Drug Screening Programam (PDSP) resources as described earlier.
Transcription factor binding data were obtained using the YEASTRACT programs (Abdulrehman et al. 2011) and gene expression data from published microarray experiments were obtained using the SPELL program (Hibbs et al. 2007).
Binding data were obtained by injecting different lengths (8-mer n – 1, 9-mer n, 10-mer n + 1, 11-mer n + 2, 12-mer n + 3, and 14-mer n + 5) of complementary strands to lesions containing 14-mer template strands (GC T vs GC A ) coated on a streptavidin chip.
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Although it is tempting to try to relate the transport data presented to the binding observations, it should be emphasized that the transport studies are conducted with lactose, which binds with very low affinity, while the binding data are obtained with the high-affinity homologue NPG.
Nonameric peptide-HLA binding data was obtained from two sources: peptide-HLA binding data recently published by Sette and coworkers [24], and data recently deposited at the IEDB by Buus and coworkers.
Liver specific CTCF binding data was obtained from Mike Wilson (Unpublished data, Duncan Odom Laboratory, Cambridge Research Institute, Cambridge, UK).
Tissue wide CTCF binding data was obtained from UCSC Encode tracks for four different released cell lines (GM12878-lymphoblastoid, K562-leukaemia, NHEK-ectoderm, HUVEC-mesoderm, [ 42, 43]).
The yeast promoter sequences and TF binding motifs data were obtained from Harbison et al. (2004).
More suggestions(17)
binding signals were obtained
binding data were derived
binding capacities were obtained
binding data were downloaded
binding domains were obtained
binding data were entered
binding peaks were obtained
binding data was obtained
binding curves were obtained
binding maps were obtained
binding affinities were obtained
binding modes were obtained
binding data were strengthened
binding data were subjected
binding data were binned
binding data were corrected
binding properties were obtained
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