Sentence examples for binding data set from from inspiring English sources
We also compared our data to a global AR binding data set from Massie et al., who identified 1,532 potential AR-binding sites in AR responsive and proliferative LNCaP cells using the NimbleGen promoter array that contains 1.5 kb promoter regions of about 25K human genes [41].
We built three data sets to construct the DNA duplex stability priors: one positive single-strand binding data set, one positive double-strand binding data set, and one background data set.
Comparing our binding data upon Actinomycin D treatment or Etoposide treatment with another available global p53 binding set, the data set from Wei et al. [24], we found that 72% and 81% respectively of the PET3+ binding sites from Wei et al. were bound in our p53 binding set upon Actinomycin D or Etoposide treatment, indicating a high overlap irrespective of cell line or treatment used.
To investigate if the identified micSeqs contain TF-binding regions we analyzed the whole ChIP-seq data set from the ENCODE project (~1900 datasets).
The TFBS data set from the UCSC genome browser only includes binding sites for 258 TFs out of these thousands of TFs.
and one data set from the NIDDK data archive.
They used data set from the National Health and Nutrition Examination Survey NHANESS).
Comparative analysis of genome-wide STAT binding data sets validated the cytokine-dependent nature of STAT binding to DNA.
We identified which of the DMRs contained CTCF binding sites by matching their genome coordinates for enrichment of CTCF binding in a data set from human liver tissue (M Wilson, unpublished data).
The transcription factor binding site data set contained both the binding sites directly identified from the canonical sequence, and the binding sites "recovered" by substituting previously identified SNP into the sequence.
