Sentence examples for binding configurations for the from inspiring English sources
This "dual" preference was observed in other positions also (position 9) and may indicate alternative binding configurations for the two peptides (refer to the molecular modeling section below).
We also performed studies of binding configurations for the phenol and benzene rings.
We find that binding configurations for BPA based ligands are similar to the configurations reported in refs (19 and 39).
Comparisons of calmodulin and S100 proteins provide insights into the role these factors play in facilitating the variety of binding configurations necessary for recognizing a diverse set of targets.
These binding configurations correspond to the lowest binding energies as calculated by the docking approach.
The medoids of the clusters obtained are considered as representative binding poses and are used as starting configurations for the MD simulations of the ligand-protein complex.
This could reflect a combination of 'conformational selection' and 'induced-fit' events, leading to a series of specific and non-specific contacts that facilitate finding the optimal binding configuration, similar to observations for other RNP assembly pathways (Bokinsky et al., 2006; Boehr et al., 2009; Rau et al., 2012; Kim et al., 2014).
Docking identified a binding site that matched the location of the NMBD in our previous structure by cryo-electron microscopy, allowing a more detailed view of its binding configuration and further support for its role in autoinhibition.
Strong binding cross-bridges are those for which the MD fit the density without modification from the strong binding configuration, as defined by rigor acto-S1 [5].
By statistically averaging this weight over several randomly generated starting configurations, we compute the relative difficulty of entering and leaving a given binding configuration.
As described in the main text, we prepared two different configurations for i) the intrinsic binding mode and ii) the inhibitory dynamics of Gd@C82(OH)22.
