Sentence examples for binding affinity was predicted from inspiring English sources

For each antigen, the binding affinity was predicted for a set of 10.000 random natural peptides using the NetMHCpan method.

For each HLA molecule, the binding affinity was predicted for a set of 500,000 random nonameric peptides of pathogenic, or human, origin.

The peptide-HLA binding affinity was predicted with NetMHCpanA or-panB using the annotated HLA molecule, and, when possible, with NetMHC (a previously reported HLA prediction tool available as www.cbs.dtu.dk/services/NetMHC) using the supertype representative.

Supplementary Data 2 lists the 69 different transcription factors whose DNA binding affinity was predicted to be affected by the 251 selected HGMD regulatory SNPs/mutations from the 13 different disease states under study.

Nevertheless, a lower binding affinity is predicted for this sequence, possibly due to the assessment of energetic penalty for the solvent exposure of the trimethylene chain formed by Cβ, Cγ and Cδ atoms in the side chain of the P1 Arg.

In short, the DNA-binding affinity was predicted for each position in the genome using binding affinity positional matrices measured for each protein studied, and positions with predicted affinity higher than the cut-off value were selected.

The proposed frameworks were applied to a complex of C3c with compstatin variant E1 and new variants with improved binding affinities are predicted and experimentally validated.

Peptide binding affinities were predicted, and the affinities of 4 distinct high binders were determined using flow-based MHC stabilization assays (Table 3a).

Peptide binding affinities were predicted using a linear combination of the hydrophobic, entropic, and electrostatic components of the interaction free energy with optimized weights.

The peptide binding affinities were predicted by first predicting whether or not each 9-mer fragment binds; if at least one was predicted to bind then the peptide was classified as a binder, otherwise it was classified as a non-binder.

In order to identify potential T cell targets, HLA binding affinities are predicted for all peptides in all blocks.