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The binding affinity was calculated as −9.59 kcal/mol by AutoDock; the Ki value was 94.12 nanomolar.
The binding affinity was calculated at −8.9 kcal mol−1.
(B ) The binding affinity was calculated at −8.9 kcal mol−1.
The approximate binding affinity was calculated as in eq 7 (see Methods).
Then the dissociation constant [ KD (M ], a primary parameter for binding affinity, was calculated according to the formula KD= kd/ ka.
Based on the docking model of AtLYK5 with chitooctaose, the binding affinity was calculated at −8.9 kcal mol−1, a value comparable to the computational binding affinity of ECP6 (−9.0 kcal mol−1).
Similar(51)
Since the difference in binding affinity is calculated and fully accounted for, significant dissimilarities can be tolerated.
To investigate whether FK-A11 interacts with PI3K similar to FK228 and FK-A5, Chemgauss 4 scores that indicate the intensity of the binding affinity were calculated in computational docking simulations.
Surprisingly, the highest TTFA-binding affinity was calculated for the Qp site of the S68A variant (Supplementary Figure S3C).
Peptides were incubated with LatB-bound G-actin (peptide 0.5 μM; LatB actin 0 59 μM) and the actin-binding affinity was calculated from anisotropy by nonlinear regression.
Seven feasible complexes were found when docking the TrNOE structure with R* and none with R. The analog peptides were modeled into the complexes, and their binding affinities were calculated.
More suggestions(18)
binding site was calculated
binding isotherm was calculated
binding affinity was affected
binding affinity was confirmed
binding event was calculated
binding intensity was calculated
binding index was calculated
binding Fbind was calculated
binding energy was calculated
binding affinity was log-transformed
binding efficiency was calculated
binding affinity was reduced
binding group was calculated
binding affinity was increased
binding affinity was studied
binding affinity was assessed
binding interface was calculated
binding affinity was seen
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