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For example, BIND used the taxid 11 489 (Influenza A virus) that has been changed to 132 504 in Entrez.
If required (e.g. interaction or interactor's name), the corresponding PSI-MI elements were set to have a unified representation for the missing information (i.e. 'NO_VALUE') instead of the inconsistent formats BIND used to represent missing values.
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Then, we identified DNase I hypersensitive sites where transcription factors could bind using published genome-wide data49 (Fig. 3a and Supplementary Fig. 10).
However, large proteins can bind using both mechanisms [ 75].
Small molecules with high affinity for their targets bind using a particular 3D-shape and interaction network.
Table 3, the forwarding bound, used in Test 5. 60 120 3 4 2 3.
To be inclusive, the lower bound used was $250 and the upper $800.
Nonspecific binding sites were bound using Protein Block (Dako).
Co-Bind uses Gibbs sampling to select binding sites and then refines the PWMs for a fixed number of times.
Local variables are bound using the let keyword.
Top-level global variables are bound using the define keyword.
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