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The binary matrix was obtained by calculating Z-statistics for each gene in each tumour sample, by comparing the DNAm and mRNA level in the sample to the normal tissue samples.
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The initial reachability matrix is obtained from SSIM by transforming information of each cell of SSIM into binary digits (i.e., 1 or 0).
Binary matrix was analysed using the DARwin software v5.0.158.
Reproducible and well-defined bands obtained after PCR amplification using each RAPD and ISSR primers were scored as 1 or 0 for the presence or absence of bands and a binary matrix was generated for RAPD and ISSR markers.
The binary matrix was edited using GenALEx version 6.4.1 (Peakall and Smouse 2006).
A binary matrix was used to compute similarities among the Ganoderma strains (Table 3).
The resulting binary matrix was exported in the form of comma-separated text for data analysis.
A binary matrix was generated using the fatty acid profile of the tested strains.
A binary matrix was constructed to codify each particular event (Additional file 2: Table S1).
Otherwise, we set it as 0. The obtained binary matrix is the final confidence map.
The binary matrix is (10).
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