Sentence examples for binary matrix was generated from inspiring English sources
A binary matrix was generated, with the fibers as the columns and median bin value as the rows.
To infer relationships, a binary matrix was generated in which absence (0) or presence (1) of DNA fragments was scored (Table S1).
A binary matrix was generated using the fatty acid profile of the tested strains.
A binary matrix was generated reflecting the presence (1) or absence (0) of each band for each sample.
A binary matrix was generated, where the presence or absence of each allele was coded by 1 or 0 respectively.
For cluster analysis of recurrent regions of CNAs, a binary matrix was generated where the rows indicated altered chromosomal regions and columns represented the tumor samples.
Second, from the initial read mapping results, a binary matrix is generated indicating which alleles a specific read could be aligned to with the least number of mismatches (Fig. 1B).
For the heatmap in Figure 5E a binary peak matrix was generated as described (Martello et al, 2012), analysed by unsupervised hierarchical clustering using Pearson's correlation coefficients, and displayed using the heatmap function in R. The ChIP-seq data used for target gene intersection in Figure 5F are Esrrb GSE11431 (GSM288355) and TFCP2L1 GSE11431.
All bands were scored as presence/absence dominant markers, and a binary raw-data matrix was generated for all gel banding patterns, in which a positive allele (presence of a band) was encoded as 1 and a negative allele as 0 (absence of a band), The molecular size of the bands was determined to enable comparison to the molecular sizes of the SSR fragments reported previously.
A count matrix was generated from COG profiles, and clustering for different COG categories was performed with R (R Development Core Team 2014), under a binary distance model and a complete clustering method.
