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A binary matrix was created with green (true) and red (false) placed for 4 conditions: (1) If syn/nonsyn variations are not present in the GMTV database.
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A binary interaction matrix was created using the network interaction triples for both the whole respiratory and therapeutic networks, Values of 1 represent an interaction; whereas, values of 0 represent a lack of interactions.
A Jaccard similarity matrix was created from the initial binary data using NTSYS-pc [ 64].
A design matrix was created, containing both main (or single) effects and interaction (or combinatorial) effects: each category within each cultivation parameter type is represented by a binary indicator column with 170 entries.
As a result seven by seven orthology matrix was created.
From these positions, a pair-wise distance matrix was created.
Briefly, a similarity matrix was created for all OXPHOS genes.
A gene-to-DO mapping profile matrix was created.
The binary adjacency matrix is created by applying a user selected correlation threshold (|rP|) to the gene by gene correlation matrix.
A row matrix is created with respect to the straightened binary image.
Within this approach a matrix is created where lines as well as columns are formed by two different binary Reed-Muller codes.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com