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This software is designed to take as input either the raw binary file containing the TIFF image pixel level information or a.CEL file, a smaller sized file summarizing the raw file.
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The binary file contains a pre-computed map between all unique k-mers and a list of all sequences containing that k-mer.
Each binary file contain a coordinate offset and thus any desired location in chromosome is rapidly accessed by moving the file pointer across the binary file with respect to this coordinate offset.
The output from CloudBurst is a set of binary files containing every alignment of every read with at most k mismatches or differences.
This provides adequate results for binary files containing uncompressed English text.
PLINK binary files containing genotype and map information of all variants on chromosomes 3, 6 and 28 detected by GATK in the 50 sequenced individuals are available at doi: 10.6070/H47H1GKK.
The output file containing the binary vector is downloaded into the program memory to begin the program fetching.
The frozen scoring profiles (PSSMs) for the non-iterative profile-sequence alignments were generated in the same way as those used for generation of consensus sequences, except that a file containing the binary version of a PSSM was also stored [blastpgp option '-C PSSM binary)'].
The inputs required include a file containing the outcomes (binary or quantitative) and genotypes coded as 0, 1 or 2 according to allelic counts.
The file containing the interactions was formatted in MITAB 2.5 format [ 35], which describes only binary interactions for one pair of interactors in each row (Table S2).
13321_2014_584_MOESM1_ESM.zip Additional file 1: File containing the molecules in.mol format.
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CEO of Professional Science Editing for Scientists @ prosciediting.com