Sentence examples for binary alignment and the from inspiring English sources

In this approach, the matrix representation is interpreted as a binary alignment and the supertree is the most parsimonious tree given the alignment.

Next we used SAMtools [ 6] on each sample to generate a Binary Alignment and Mapping (BAM) file, to sort it and to remove Polymerase Chain Reaction (PCR) duplicates.

Alignments were converted from the sequence alignment map (SAM) format to binary alignment map (BAM), and the BAM files were sorted and indexed using SAMtools (version 0.1.19).

This tool assembled the BAM (binary alignment map) and BAI (binary alignment index) files and aligned them to the rCRS using TMAP Smith Waterman alignment algorithm [22].

Also, the binary alignment analysis of the 21 GmGER genes with each predicted paralogous genes yielded consistent results supported by high sequence identity values.

Although this deletion was identified by visual inspection, the binary alignment map file for the region was analyzed by the application BreakDancer to determine if the deletion could be identified algorithmically from whole genome sequence data.

It provides a user-friendly web interface for uploading raw RNA-Seq data such as FASTQ, SAM (sequence alignment map), and BAM (binary alignment map) files, and for exploring RNA editing.

RNA-eXpress accepts mapped reads in the standard binary alignment (BAM) format and produces a study-specific feature annotation in GTF format, comparison statistics, sequence extraction and feature counts.

The binary alignment mapped files generated by the Burrows-Wheeler Aligner software were used to generate Simple Alignment Maps.

Alignments were converted to sequence alignment map format followed by binary alignment map, sorted and indexed (Samtools version 0.1.19).

For this study, the binary alignment mapped (BAM) files generated from the study of Ahmad et al. [ 25] were used to generate Simple Alignment Map (SAM) and, subsequently, Variant Filter Calling (VCF) files through the use the routine mpileup in the software SAMtools [ 90].