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Since experimentally determined structures may be a somewhat biased set of all protein interactions, our method has the advantage of not learning on known complex structures.
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Using a simple measure, we compared the composition bias of the set of all proteins, of random proteins (Section 2) and of ORFan proteins in each genome.
However, the validity of research synthesis based on published literature is threatened if published studies comprise a biased selection of the whole set of all conducted studies [ 1].
A strong dinucleotide compositional bias was evident in the ICCS data set of all species as shown by the higher levels of codon bias (i.e. lower Nc values) in the dinuICCS data set compared with the others (Fig. 2).
To avoid bias, we also calculated F for the set of all sequences except the Kinases (ALL-kin).
(1) The set of all pairs of bias coefficients represented in the B 12 a model are coordinate points that in aggregate compose a unit square, indicating that the unit square is equivalent to a comprehensive index for addressing response hyperbolae.
This dataset was used as a basis for a focused literature search from the set of all proteins that display miRNA target bias.
In both cases, once the p-bias of each function from the corresponding distribution, the output for each input state is then randomly set, according to the specific p-bias, independently of all other output states.
To ensure a fair comparison between all data sets, first, the GC bias of all mapped reads was determined and, if necessary, corrected so that input and ChIP samples had similar GC distributions of their reads (correctGCbias module).
Judges have the most intractable bias of all: the bias of believing they are without bias".
We analyzed the general codon bias of all 61 codons in the three sets.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com