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Data, including measures of study bias, were extracted using a standard data extraction sheet (copy included as Additional file 2) by two of the authors (OM and KN).
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Data were extracted using a Matlab extraction protocol.
Samples were extracted using RIPA buffer.
Background corrected features were extracted using Agilent Feature Extraction software.
Total RNAs were extracted using QIAamp viral RNA Minikit (Qiagen).
The differentially accessible genes were extracted using DESeq2.
Ripple events were extracted using a two-step procedure.
The powdered leaves were extracted using solvents of increasing polarity and extracts were concentrated under Rotavap (SI methods).
Data presented in tables were extracted directly, but data presented in figures were extracted using Engauge Digitizer software version 4.123.
Total RNA was extracted from nodules and the remaining roots were extracted using TRIzol® reagent (Thermo Fisher Scientific, Waltham, MA, Cat. 15596018).
Data were extracted using BeadStudio v3.0 software.
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