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In the original publication, the authors discuss the differences in agreement between typing methods in the two populations.
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Therefore, the availability of confidence intervals reinforces the important role of W in generating maps of type equivalences between typing methods.
Comparison between typing methods will pinpoint the limits and effectiveness of each method and will improve in turn the choice of a nonspecialized laboratory in terms of simplicity, time and cost.
The quantitative level of congruence between typing methods was calculated using the adjusted Rand and Wallace coefficients, available at http://www.comparingpartitions.info/.info/
These properties require sophisticated molecular typing methods in order to differentiate species and subtypes, and to elucidate infection sources.
This index of diversity has been applied to compare typing methods in order to select the most discriminatory system [ 19].
Pulsed-field gel electrophoresis (PFGE) is one of the most widely used typing methods in local, national, and international S. Typhimurium surveillance (2, 6, 7 ).
Finally, it is difficult and costly to set up the typing methods in a form where they provide accurate quantitation of oocyst numbers present (quantitative PCR or serial dilution and most probable number methods).
Typing E. coli O157 H7 by PFGE is currently the preferred typing method in our laboratory.
Regarding the strains included in our study, the assignment of P1 types to MLVA types confirmed that no clear relationship between the typing methods exists (Table 2).
In contrast there are presently no typing methods established in this setting and epidemiological data regarding TB lineage type are only assessed retrospectively outside of the country [ 25– 27].
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