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For example, it is possible to automatically select all the edges between two nodes in the network in one operation, to generate the network corresponding to the double network differences between two networks A and B (creation of the two networks corresponding to A− A∩ B and B− A∩ B), or update all the subnetworks of a session after some changes have been made to the initial one.
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Methods of PH transformation were developed by introducing a set A that contains measures of correspondence between the reference and current PH network tuning coefficients and by finding a measure of correspondence between two networks as a whole.
The proposed solution was run in pilot form between two networks over a 1-year period.
This is often the case when the difference between two networks is a subtle, averaged effect.
The number of edges of the subnetwork S common between two networks for a GO term t is given by k = S t e (G 1 e ∩ G 2 e ).
(We already demonstrated the superiority of MI-GRAAL's graphlet-based NCF over IsoRankN's popular PageRank-based NCF [ 2, 3].) MI-GRAAL [ 7] and GHOST [ 25] are two state-of-the-art global network aligners that injectively map nodes between two networks in a way that preserves topologically or functionally conserved network regions.
In order to interpret the functional role of shared edges that define an interface between two networks, we performed a Gene Ontology enrichment analysis (GEA) and a gene pair enrichment analysis (GPEA), see 'Methods' section, for overlapping edges between two networks for the GO category 'Biological Process'.
HOPEMAP (Tian and Samatova, 2009) iteratively constructs the alignment between two networks by searching for a common maximally connected component.
The overall similarity between two networks can be quantified in a simple fashion by comparing the networks' global properties, such as the degree distribution, clustering coefficient or diameter (Newman, 2010).
This implementation of MSL requires a distance metric between two networks.
Firewall: A software program that controls information flow between two networks.
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