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The Z score is used in our method to quantify the similarity between two lists of terms.
Moreover, Kendall tau rank correlation coefficient test shows that there is significantly positive association between two lists of scores.
The similarity between two lists of length r can be described using the 'correspondence at the top' (CAT r)) plot.
Then under different conditions we performed the one-tailed rank sum test on the expression correlation coefficients to compare the expression coherence between two lists of functional binding target genes of TFs from different methods.
The program computes a Fisher's two-tail exact test to statistically define over- or under-represented terms between two lists of genes, and the original P values are corrected by a false discovery rate approach [ 79].
Semantic similarity between two lists of enriched GO terms was calculated with the bioconductor package GOsemsim [ 65] (http://bioconductor.org/packages/2.12/bioc/html/GOSemSim.html), using Wang's method to calculate pairwise semantic similarities between GO terms and the BMA (best-match average) method to combine semantic similarity scores of multiple GO terms.
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The CAT-plot thus estimates the agreement between two lists irrespective of the particular score values of the genes in the lists.
We utilize the right test that evaluates the significance of positive association between two lists, ie, an enrichment of elements of list A (eg, l i) in list B (eg, s) or vice versa.
In the simplest case it measures the similarity between two lists L1 and L2 of the size g.
Concordance between two lists (L1 and L2) of n genes is defined as where L i (n) is the set of the n top-ranked genes in list L i. Concordance measures the proportion of overlapping genes between two lists (Patterson et al., 2006).
There is a striking congruence between the two lists of amino acids.
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Write better and faster with AI suggestions while staying true to your unique style.
Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com