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a c represent three scenarios between two interacting atoms A1 and A2, wherein a bond was considered to be present.
Residues r i with ASA loss more than 20% were selected as designated epitope residues, r i ∈ { e p i t o p e r e s i d u e s } i f A S A f r e e - A S A c o u p l e d A S A f r e e > 0. 2 b) The majority of contacts between two interacting atoms occur at <5Å separation.
Similar(58)
These non-covalent interactions are represented as vectors (NCIVs) connecting the centers of two interacting atoms.
A covalent bond, Lorna Dune informs me, is the scientific term for the attraction between two atoms sharing atoms.
As mentioned in the methodology, in the graphs generated by GeminiGraph the distance between two interacting segments of interface is fixed and identical for all interfaces, independently of the real atomic distances that exist between the interacting atoms.
The bond length between the interacting atoms and their neighboring atoms were computed with GaussView 5 tools for both configurations, with the results shown in Table 7.
The distances between interacting atoms are expressed in Å as mean values from the distances measured for all individual frames of the MD trajectories.
l is the spectral distance between the two interacting subcarriers.
The distances between interacting atoms in residues that form salt bridges are listed in Table S2.
The black line between two atoms indicates these two atoms form a pair.
By interact, we mean distance between two heavy atoms is less than 6 Å.
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Justyna Jupowicz-Kozak
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