Sentence examples for between two genomes based from inspiring English sources
For example, gene content methods define an evolutionary distance between two genomes based on the percentage of shared homologous genes.
Functional relatedness of genomes is a measure of similarity between two genomes based on the similarity of the functional annotation of genes.
Hierarchical clustering (UPGMA) of the 29 strains was performed using a distance between two genomes based on gene content (binary data for presence or absence of each protein family) measured by one minus the Jaccard coefficient (Jaccard distance).
We used Jaccard distance (one minus Jaccard coefficient) to measure a distance between two genomes based on binary data, 1 or 0, representing the presence or absence of each protein family for each genome (gene content).
> > -wrap-foot> Ancestral karyotypes (protochromosomes) were reconstructed by computing common intervals of conserved blocks between two genomes, based on validated orthologous genes/blocks, or within a single genome, using validated paralogous genes/blocks, to obtain contiguous ancestral regions (CARs) (Salse 2012).
In Track 2, similarity was defined as the Levenshtein distance between two genomes.
Sequence alignment helps bioinformaticians to understand genome and find the answers related to similarity and dissimilarity between two genomes.
vContact (https://bitbucket.org/MAVERICLab/vcontact 61,62 was then used to calculate a similar score between every pair of genomes based on the number of PCs shared between two sequences and all pairs using the hypergeometric similarity, as previous2,59.
We performed a detailed synteny analysis of the relationship between the pig and human genomes based on the pairwise alignment between the two.
We estimated the overall substitution rate between the nine- and three-spined stickleback genomes based on the divergence between unigenes and their orthologs (coding region and UTRs at least 50 bp long) while considering a divergence time around 13 Mya [ 22].
Nine of these rearrangements would have taken place between the Fragaria and the Prunus genomes, based on our results.
