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The overlap measure indicates the degree of overlapping between two clusters, which can be quantified by computing an inter-cluster overlap [29].
The first part of (10) is similarity between two clusters, which is used to evaluate the similarity of two clusters; the smaller the similarity, the better the cluster effects will be, and vice versa.
We used the Euclidean distance to define the proximity of strains to one another, and used Ward's method to define the distance between two clusters, which determines the cluster structure by minimizing the sum of squares when two clusters are joined.
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The height of the link illustrates the distance between the two clusters which consists of those objects.
To determine which UCP cluster is functionally more divergent, we estimated the type-I functional distance between any two clusters, which is defined as dF = −ln(1 - θI).
The gray number next to each meta-edge is the total numbers of all edges existing between the members of the two clusters, which are also reflected in the thickness of the meta-edge.
Note that, even for relatively large errors, for example, (corresponding to a relative error standard deviation between two clusters of, which is percent of the packet duration), the degradation is not overly severe, and we see a significant gain in throughput over a random scheduling.
These 534 probe-sets were K-median clustered using settings indicated in the Methods to yield nine clusters which contained between 31 and 80 genes.
A cluster analysis of Affymetrix gene expression profiles identified three clusters, which discriminated between different tumour histology types (supplemental Figure 1, available at Annals of Oncology online) but not clinical benefit status (data not shown).
Unsupervised clustering analysis grouped these gliomas into five clusters, which we called Cluster 1 (C.1) to C.5 in this study (Fig. 1).
The basic design element of fuzzy separation is the fuzzy deviation between two cluster centers, which is calculated by taking into account the locations of the rest of the centers.
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