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Measurement of the force between two atoms is performed routinely with the atomic force microscope.
When a covalent bond (a nonionic chemical bond formed by shared electrons) is made up of two electrons, each of which is supplied by a different atom, the process is called colligation; the reverse process, in which the electrons of a covalent bond are split between two atoms, is known as homolysis.
A conflict is detected when the distance between two atoms is less than 0.4 Å.
The topological distance between two atoms is measured as the number of bonds on the shortest path between them.
The flexibility similarity between two atoms is the weighted sum of the flexibility similarities of the second and third order neighbors.
If the E ele between two atoms is less than zero, it will be added into the electrostatic attractive potentials, and otherwise added into the electrostatic repulsive potentials.
Similar(51)
It is similar to topological atom pair approaches [8] with the exception that all-shortest paths between two atoms are explicitly stored.
By contrast, the weights of the number of double bonds and the number of bonds between two atoms are less than 0.1.
Van der Waals interaction between two atoms was evaluated using CONTACT program of CCP4 program suit by setting the limit of distance below 4.5 Å [55].
Most of the tools for quantifying the extent of chemical bonding between two atoms are quantum-chemical in nature.
The default unit of distance between any two atoms is 1.5 Å, which applies regardless of atom and bond type.
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