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Striking differences in the incidence and lengths of introns are also observed between translated and untranslated regions of genes (Hong et al. 2006; Scofield et al. 2007; Hughes et al. 2008), also suggesting different evolutionary dynamics in different classes of introns.
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This was done to detect possible semantic differences between the translated and original versions.
Similarity searches and sequence alignments between translated Ambystoma sequences and translated genome sequences were performed using the program BLAT [ 52].
Decisions were made by the committee to achieve equivalence between the components of the translated and source versions [ 17].
It is plausible that competition between translated products of edited and unedited orfB transcripts may lead to impaired biogenesis and uncoupling or decreased phosphorylation activity of the F1F0 ATPase complex.
The number of synonymous nucleotide divergences per synonymous sites between translated regions of SlAP3X and SlAP3Y was 0.12 (SE, 0.034).
In a recent Cell paper (Guttman et al, 2013), a parameter called the Ribosome Release Score (RRS) was used to discriminate between translated protein-coding regions and non-coding transcripts with similar ribosome densities.
To further validate the accuracy of our ortholog assignment, we compared protein length coverage, using pair-wise alignments between translated An. albimanus proteins and their corresponding best match in An. gambiae.
(Ibid., §19, 329) {§4.1} [Logical analysis] stands somewhere between translating and paraphrasing.
Promer does alignments between translated nucleotide sequences.
But it is also a tradimento, for it is the relationship between translator and translated, betrayer and betrayed.
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