Sentence examples for between transcript and genome from inspiring English sources

To fully confirm that increased base conflicts exist between transcript and genome sequences in patient's tumors, back-to-back exome sequencing and RNA-seq would be required.

The best alignments between transcript and genome annotation (those spanning at least 90%% of the transcript length) were selected and subsequently clustered in groups based on a minimum overlap of 30%% between alignments.

We now investigated the possible relationships between transcript elongation and genome instability, focusing primarily on genomic loss-associated chromosomal breaks as these were correlated with genes and CFSs.

De novo transcriptome assembly of RNA-seq data (e.g. [ 19- 21]) generates contigs representing transcripts without relying on annotated transcript models or assuming collinearity between transcripts and the genome, and so is well suited to discovering novel transcript structures.

you will need to put alignAssembly.config, transcript and genome file in your real data director.

Comparing transcript and genome sequences allowed the identification of sense transcripts for 4,675 genes and antisense transcripts for 210 genes.

Sequence alignment between those transcripts and genome scaffolds revealed that rAc-DAF-16 bound fragments resided in coding regions, introns, or 3' untranslated regions (3'-UTR) (Table S3).

In this formulation, we assume each alignment unit is a short segment shared between the transcript and the genome, possibly containing some mismatches.

Based upon this approach, we also describe a number of algorithmic formulations for 'chaining' fragments shared between the transcript and the genome sequences (within some small number of mismatches), considering alternative structural formations of the resulting fragment chain.

Given a set of shared fragments between the transcript and the genome, we show how to obtain an optimal chain of fragments in O(K) time for disjoint or overlapping fragments (K being the total number of fragments).

Given a set of 'fragments' between the transcript and the genome sequences, this approach aims to find the optimal chain of fragments within certain constraints that will give the maximum alignment score with respect to the fragment 'qualities' and transition penalties.