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Moreover, we studied differences in metabolic characteristics between those identified by HbA1c and by the OGTT alone.
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There was considerable agreement between these issues and those identified by the participant families.
The statistical significance of the overlap between our gene lists and those identified by others (Table 1) was calculated using a web-based hypergeometric distribution calculator designed by Jim Lund (University of Kentucky, Lexington, KY, USA) (http://nemates.org/MA/progs/overlap_stats.html).html
To identify H3K27me3 peaks conserved between cell lines and called by independent means, we used only those MACS-called peaks that overlapped between our H3K27me3 peak set and those identified by the Encode project (Grant et al., 2011).
The overlap between the genes identified by GeneFriends and those identified by GeneNetwork was also examined.
The transcription start and termination sites were compared between genes identified by Tiling Assembly with those identified by the FL-cDNAs (Fig. 9).
In summary, our analysis found a considerable overlap between prostate cancer genes identified by GWAS and those identified by global profiling of the gene expression.
The loss of a statistical difference in PICU mortality between patients identified by physician diagnosis alone and those identified by both definitions after correcting for severity of illness is consistent with these suppositions.
We further found that at the levels of gene interaction networks, there was in fact good consistency between the genes identified by association studies and those identified by molecular biological studies of drug-regulated genes.
Both edgeR and baySeq identified fewer differentially expressed genes than DESeq2, although there was a high overlap between the significant genes identified by these methods and those identified by DESeq2 (Table S2).
It is not obvious whether there is a consistency between the candidate genes identified by GWAS (GWAS genes) and those identified by profiling gene expression (microarray genes).
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