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Exact(1)
Our best hypothesis is that technical differences between these two sequencing chemistries, including sequencing bias, differences in library construction, and assembly characteristics underlie the unexpectedly narrow breadth of the G. arboreum EST collection.
Similar(58)
This is achieved through non-linear mapping and certain constraints between these two sequences.
In the CRP, the length of the diagonal pattern of "1" indicates the degree of similarity between these two sequences.
Then, the significance of the difference between these two sequences is examined by applying a one tailed t-test: we want to see if the proposed algorithm is better than the baseline one.
However, the similarity between these two sequences and our clones was low, ranging from 88% to 95% (Table S1).
The complementarity between these two sequences is exploited in the subsequent processing described below.
It is likely that the deletion resulted from an unequal crossing-over between these two sequences.
Additionally, only two positions differ between these two sequences: positions 37 (N in the "ancestral sequence", versus S in HIVLAICG) and 41 (K versus R respectively).
Consistent with the results from gltA, ompA from IrITA2 was 100% identical to IrR/Munich; however, two substitutions were found between these two sequences and that of IRS4.
The alignment between these two sequences falsely indicates that shuffled sequence in the query is homologous to a neighboring Hydrolase (PF00702) domain in the library.
The number of SNPs identified between these two sequences is approximately twice the average found in other sequences (117 SNPs, 47 non-synonymous SNPs).
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