Sentence examples for between these contigs using from inspiring English sources

The program is able to detect contigs from the same transcript as well as the sequences between these contigs using paired-end reads.

The quality of the genome assembly was evaluated for these contigs using QUAST version 2.357.

The SNPs were mined in these contigs using POLYBAYES software.

Scaffolding was performed with these contigs using SSPACE v2.0 [ 74], and 43 scaffolds were built based on the distance information between paired reads.

The reference-ordered and -oriented genomic scaffold that was used for the subsequent analysis was generated by concatenating reordered contigs by inserting 5Ns between the contigs using an in-house python script.

We then built a physical map of the critical region between these markers using the Zv7 genomic assembly to obtain contigs, and bridged the gaps between contigs using BAC information from the Zebrafish Genome Fingerprinting Project and sequences from the Ensembl trace repository.

Long range PCR was performed to fill gaps between the assembled contigs, using the enzyme BD Advantage (Clontech, CA, USA) on a DNA template isolated directly from the K. veneficum culture (primer sequences provided in Table S1).

Closing of gaps between contigs using directed finishing experiments can be a long and laborious component of a sequencing project.

Displaying relationships between contigs using graphs in Cytoscape rather than tables provides a more straightforward visual representation.

P. ulmi contigs were subsequently concatenated into a single sequence with spacers ("Ns") of length 100 added between contigs using a custom python script.

To close gaps between these four contigs de novo, outward-oriented polymerase chain reaction (PCR) primers were designed to amplify sequence-spanning gaps between contigs using Primer3Plus (Untergasser et al. 2012) with the ends of the four large contigs as references.