Sentence examples for between the two alignments from inspiring English sources
Only 120 of the 33.6 million (0.0003 %) reads were aligned differently between the two alignments.
To emphasize, overlapping denotes some coverage of common sequence ranges between the two alignments for the same domain model.
The second is a Genomic Distance Penalty (GDP) calculated as log10 of the number of base pairs along the reference genome between the two alignments.
Although we report results across the full spectrum of alleles, the proportion of sites that were significantly biased in both the alternate and reference alignments was almost the same regardless of the absolute concordance between the two alignments.
Additionally, there may be overlap between the two alignments (V) because bases at the breakpoint in the read could be assigned to either location in the reference genome without changing the junction sequence.
All invertebrate-type lysozymes could be reliably aligned to each other at both protein (alignment 2; Fig. 3) and DNA sequence level (alignment 3; position of indels is identical between the two alignments).
We found a good agreement between the two alignment methods in the seven experiments where both blood vessels and electroporated neurons were used.
Approximately 90% (depending on the applied FDR) of genes under positive selection based on the PRANK alignments are also detected when using MUSCLE alignments, suggesting that the majority of positively selected genes are consistent between the two alignment approaches.
All results were highly congurent between the two alignment methods; we therefore present parameter estimations derived from alignments using MUSCLE, and present only those derived from T-Coffee which would lead to different conclusions.
Most of the length variation was concentrated in the hypervariable regions of the LSU fragment, while for the rrnL and SSU genes the length variation between the two alignment methods used (MF and PR) was relatively small (Table 2).
Despite the large differences in the length of the combined sequence between the two alignment methods (mostly due to LSU), the changes in the topology or level of support of the resulting trees were negligible (see below).
