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The pause sites were located between the target sequence within the leader region of the mRNA that interacts with a 91-base countertranscript and the beginning of the repA1 coding sequence.
This program computes the correlation coefficient of pair wise distances between the target sequence and all other sequences on both sides of a sequence position.
Therefore, we borrow the idea from the PDNN model that is first introduced to model the binding affinity between the target sequence and probe on the microarray.
The score of a single mismatch, depending on the mismatch position, between the target sequence and corresponding probe is from 24 to 21.
Motivation: Pairing between the target sequence and the 6 8 nt long seed sequence of the miRNA presents the most important feature for miRNA target site prediction.
By definition, we see that the proposed estimators consider all suboptimal secondary structures of the target RNA sequence (and its homologous sequences) and all suboptimal pairwise alignments between the target sequence and each of homologous sequences.
Similar(42)
In these alignments between the target sequences and template structures, a fragment of the C-terminus region of TRR1 (Glu325-Leu358) and of the N-terminus region of KRE2 (Met1-Phe70) did not align.
We optimized the quenching behavior of this probing system by using graphene oxide (GO) to induce a high degree of discrimination factor (44.6 times) between the fluorescence of the target sequence and that of other non-target sequences.
As the temperature was gradually increased, the duplex hybrid formed between the MB and the target sequence was broken and the MB returned to its original hairpin state resulting in a weakened fluorescence signal.
The local alignments are found, as follows: First, the hits between the query and the target sequence are found.
We have adopted this algorithm to generate partial alignments between the query and the target sequence.
More suggestions(15)
between the cDNA sequence
between the protein sequence
between the target gene
between the target output
between the microRNA sequence
between the testing sequence
between the percept sequence
between the target log
between the target impulse
between the target pixel
between the polymerase sequence
between the target platform
between the target surface
between the region sequence
between the leader sequence
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