Correcting these errors in the starting structure prior to alanine scanning avoids an asymmetrical comparison between a poor input structure and a repaired alanine point mutant.
The starting structure of r(I 10 was ordered in A-form.
Otherwise, the starting structure was the same as the partially refined crystal structure.
We refer to the pre-packed input structure as the starting structure.
The starting structure was the crystal structure of suilysin monomer.
First, the starting structure (structure 6) is generated from the template nucleic acid in the starting material production step.
(39) The rmsd (Root Mean Square Deviation) between the backbone atoms of the optimized structure (7A, blue) and the previous model used as the starting structure (7A, red) was 3.1 Å.
Next, the starting structure becomes structure 7 with a stem-loop structure by self-primed DNA synthesis.
The results are independent of the starting structures.
However, we usually observe surprisingly good agreement between experiment and RNA simulations due to compensating errors, base-pairing and stacking constraints, and the accuracy of the starting structures.
