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In this viewer, the system tells orthologous correspondences between the sequences compared interactively.
Partial similarity does not imply functional equivalence between the sequences compared.
CGAS provides a unique function to align the query and the subject annotation panes based on the putative orthology relationships between the sequences compared.
However, these tools do not directly show the collinearity between the sequences compared, although it is an important information source about genome evolution, such as duplication, inversion, translocation, insertion and deletion.
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A larger distance between these sequences compared with those of other proteins might indicate that the protein has been evolving faster, and novel functions may have been developed among the more advanced species.
Alignment of PrP and ZIP10 sequences from pufferfish (Takifugu rubripes) revealed multiple additional amino acid residues conserved between fish ZIP10 and PrP-1, primarily in highly conserved sequence positions (28% sequence identity between pufferfish sequences compared to 16% identity observed in the respective murine sequences) (Figure 3A).
Variations between the nt positions of the transcriptome sequence compared to other sequence sources are either due to deletions or intronic sequences in the other sources.
Thereby, the violation costs are calculated based on the distance between the activities of a certain sequence compared to the target sequence.
The concordance between the samples taken for DNA sequencing compared to PCR-RFLP analysis was 100percentt.
*Nucleotide sequence similarity is indicated by the percentage identity between each pair of sequence compared.
For distinguishing between Plasmodium and Haemoproteus spp., the sequences were compared to their closest sequence matches in GenBank using the NCBI nucleotide blast search and by confirmation through microscopy slides.
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