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For deletion errors, Seq.type accounted for 2.36% ± 1.39 of the variation, reflecting substantial heterogeneity between the reference sequences.
angustissima sequences and then looking for polymorphisms between the reference sequences and the mapped reads resulted in the identification of 8494 fixed SNP differences over 3979 shared contigs.
XMRV consensus, PreXMRV-1, PreXMR-2 [ 7]; 2. Xmv, Pmv and Mpmv sequences [ 4]), we computed the pairwise sequence identity among the reference sequences as well as between the reference sequences and the most similar sample sequence from each mouse.
A basic local alignment search tool (BLAST) search [ 19] was performed between the reference sequences of the candidate genes and the reference sequences of B. rapa (v1.2) [ 14] and B. oleracea (v1) [ 15].
Some variants between the reference sequences of NANOG and NANOGP8 utilized in cancer research to distinguish RT-PCR products are polymorphic within NANOG or NANOGP8 and thus are not universally reliable as distinguishing features.
Similar(55)
That is, the higher the GRG is, the more similarity exists between the reference sequence and the compared sequence.
The GRG expresses the degree of correlation between the reference sequence (larger-the-better or smaller-the-better) and the comparison sequence [32].
We identified a single base difference at location g359 A → G on exon 1 between the reference sequence and patient's sequence.
The deviation sequence Δ o i ( k ) is the absolute difference between the reference sequence x i 0 ( k ) and the comparability sequence x i ∗ ( k ) after normalization.
A MR (matching region) is a common substring between the reference sequence and the read.
Any nucleotide difference between the reference sequence and the ancient DNA reads is a putative private variation.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com