Sentence examples for between the reference genome from inspiring English sources
The SNP numbers of each sample give an overview of the genomic difference between the reference genome BTx623 and individual genomes.
The genomic sequence comparisons between the reference genome of E. anophelis NUHP1 and another ten available draft genomes of Elizabethkingia spp. (accession numbers: AVCQ00000000, AHHG00000000, ASAN00000000, ASYH01000000, ASYI01000000, ASYJ01000000, ASYK01000000, ASYF01000000, ASYG01000000, and ANIW01000000) were performed as follows.
Once the reads have been properly mapped, genomic variants can be discovered by identifying differences between the reference genome and the aligned reads.
We have developed MU2A, a variant assessment tool that accepts either genomic or transcript positions and reconciles the discordance between the reference genome and transcriptome when predicting the effects of sequence variants.
Differences between the reference genome and transcript libraries complicate the determination of the effect of genomic sequence variants on protein products; similarly, these differences complicate the mapping of sequence variants found in transcripts to their respective genomic position.
Based on these results, we conclude that gene expression studies in yeast and Drosophila could be reliably performed with 50 bp reads, even when some sequence divergence between the reference genome and the transcriptome is expected.
Zhang, J. et al. Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63.
We also found great differences between the reference genomes when they were used to diagnose the composition of the metagenomes.
Similarly, no clear difference between the reference genomes 'Prata Anã' (53; AAB) and 'BRS Platina' (84; AAAB) was detected.
Identification of orthologous introns between the reference genomes of each group: these introns are defined by their bracketing orthologous exons (shown in blue in Fig. 1 ).
Substitutions between human and chimp were inferred from the comparison between the reference genomes of the two species, using the syntenic net alignments between hg19 and panTro2 available on the University of California Santa Cruz (UCSC) platform (Karolchik et al. 2012).
