After two approaches to remove redundant data, segments used to calculate the interchange probability were quite different from the query segment.
The intergenic sequence between the two annotated genes in each genomic segment is used as a BLASTX query against a small database consisting only of the protein sequences of the genes that are syntenic with the query genomic segment.
In the evaluation, we showed the top three recommended results for each query human motion (query segment).
First, let us suppose a query peptide P and the training set
The expression next to the first link, "397 mentions in 366 articles," means that among all segments matching to the query, 397 segments in 366 articles mentioned CSF3.
where the denominator corresponds to the number of query segments.
The typical BLAST output produces so-called High-scoring Segment Pairs (HSPs) that correspond to each matching region between the query and the database hit sequence.
Q indicates the query fingerprint, D*1, D*2, D*3 indicate the similarity distance between the query and templates, and D*cindicates the distance between the query and the centroid.
Computing the directional distance between the query q1 and the query q2 refers to computing the directional distance between the couple of spatial references of each query.
Computing the metric distance between the query q1 and the query q2 refers to computing the metric distance between the couple of spatial references of each query.
