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Exact(7)
As a proxy for functional variability, similarities and differences between the protein sequence of OR genes are often used [7], [14].
Because there is much slower growth in information on 3D structure, there is an increasing gap between the protein sequence information and protein structure information.
Second GeneWise was conducted between the protein sequence of the putative parental gene and its retrocopy (generally, there should not be any intron in this result).
First GeneWise was conducted between the protein sequence of putative parental gene and its genomic sequence, which provide all the intron position and length of putative parental gene.
Each point corresponds to Δ G of a protein in internal nodes of the phylogenetic tree with the ωML value calculated between the protein sequence itself and its closest extant sequence in the phylogenetic tree.
As an initial step for identifying genes encoding TCS elements from the annotations of the Glyma1 model, a reciprocal similarity search method was performed between the protein sequence data set of known TCS members, including all the HKs, HPts and RRs of Arabidopsis and rice, and the modelled soybean proteome data set.
Similar(53)
Between clades, the protein sequence identity ranged from 63.1%NC64A4A vs. Pbi viruses) to 70.6% (Pbi vs. SAG viruses).
The article, by Dr. Samuel Karlin and colleagues at Stanford University, says there are many small discrepancies between the protein sequences that would be expected from Celera's fruit-fly genome and those of actual fruit-fly proteins recorded in SwissProt, a database of protein sequences.
However, there is negligible similarity between the protein sequences of the non-HMG domain regions in the members of different SoxB subgroups as in the members of different Sox groups.
The main objective of this study was to analyze which amino acids are preferably replaced by which other amino acid depending on the degree of divergence between the protein sequences and to identify and quantify four factors controlling these exchanges.
The consistency in the number of amino acid sequences with filtered and non-filtered EST alignments indicates that, within the subset of sequences that are supported by EST data, there are strong similarities between the protein sequences and the EST sequences.
More suggestions(17)
between the region sequence
between the protein emission
between the training sequence
between the loop sequence
between the protein binding
between the protein misfolding
between the polymerase sequence
between the attB1 sequence
between the protein matrix
between the separation sequence
between the protein moiety
between the genome sequence
between the protein system
between the leader sequence
between the domain sequence
between the protein peptide
between the protein expression
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