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There were no significant differences between the microarray cohort and the full cohort with regard to gender, age, or BMI.
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The validations were conducted in the microarray cohort and the validation cohort.
The differences in miR-548q in the validation cohort and miR-483-5p miR-483-5p miR-483-5port were not quine significanthemicroarrayy due to the sample size.
We divided the microarray cohort into molecular subtypes by the status of estrogen receptor (ER) and HER2.
The first microarray cohort of 198 subjects (88 cases and 110 controls) was derived from the Duke University CATHGEN registry, a retrospective blood repository, enrolled between August 2004 and November, 2005 [ 16].
In this study we used the same tissue microarray cohort to evaluate the relationship between intra-tumoral macrophage infiltration and EMT.
AJG and AC independently scored the tissue microarray cohorts, providing a histoscore for quantification.
Also, the demographics of the microarray sample cohort are provided in Additional file 2: Table S2.
For the second internal cohort, the microarray experiment was performed similar to the first cohort except that version 3 of Illumina Human Ref-8 BeadChip (Illumina Inc) was used instead.
This relationship is also defined between the classes microarray washing and hybridization, microarray image acquisition and microarray washing, and between the classes microarray gene expression profiling and microarray image acquisition.
The microarray platform similarity between the two cohorts reduced the potential biases arising from in silico merging.
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