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The order of the mapped loci was generally well conserved between the integrated map and the accession-specific maps, which indicated that the positions of the loci on the present integrated map can be regarded as the "consensus" positions.
However, the order of mapped loci was generally well conserved between the integrated map and the RIP-specific maps, which indicates that the positions of the loci on the present integrated map can be regarded as a good "consensus map".
Out of these, the projection of 52 genes was performed according to the common markers between the integrated map and the single genetic maps.
Thus, low correlations between the integrated map and a particular population-specific map, along with good correlations between the integrated map and the other two component maps (Table 3 and 4), could be indications of genome rearrangements in one of the populations.
Although the 2010 assembly contains larger contigs, we find conflicts between the assembly with HAPPY map (alignment between the integrated map and both of the assemblies is shown in Figure 1 and Additional file 4) and BAC linkage data.
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Additional BAC clones on the anchored shotgun scaffolds were used to search the FPC map for extending the integrated map.
The number of markers in common between the integrated male and female maps varied for each linkage group, ranging from 25 to 106 markers per linkage group (File S3).
Similar associations between mapping and sequence data may be established using marker and locus names, provided that marker nomenclature can be resolved Sequence-based connections between mapping data sets, integrated maps, and genomic sequence may be more reliable and are more amenable to automation than attempts to connect sources using names and other information.
For 11 LGs, there was good agreement between the integrated and population-specific maps (Spearman's correlation r > 0.90 for all three pairwise comparisons).
This apple MdMYB3 gene is mapped onto linkage group 15 of the integrated apple genetic map.
The mapping corresponded to the integrated intensity of the Raman band between 1550 and 1700 cm−1.
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between the integrated score
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between the integrated model
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between the integrated light
between the integrated treatment
between the integrated male
between the preoperative map
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