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Then, GWAMAR tries to find the associations between the input phenotype and genotype data by computing several statistical scores.
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The input phenotype similarity matrix A is a symmetric matrix in which each row (and column) corresponds to a phenotype.
The least square means of genotypes for the various disease parameters were used as the input phenotype.
The input phenotype data was collected from over 20 publications issued together with the fully sequenced genomes.
The haplotype associated mapping (HAM) algorithm uses ANOVA to calculate the strength of genetic associations between an input phenotype and the ancestral haplotype structure (as inferred using a local window of three adjacent single nucleotide polymorphisms (SNPs) across the genome).
Briefly, we use ANOVA to calculate the strength of genetic associations between an input phenotype and the ancestral haplotype structure (as inferred using a local window of three adjacent SNP alleles across the genome).
This produces interference between the input and output channels, however, that can affect the results.
The assessment of an input comparison showed no significant differences between the input fractions (Fig. 1d).
The map between the EC input signals and phenotype can play a vital role in multiscale models of sprouting angiogenesis [ 34, 35].
However no correlation was observed between the observed phenotype and Vitamin B-6 levels in seeds.
For experiments with categorical or continuous phenotypes, the input parameters to perform the random forests analysis are described as follows.
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