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The pairing is between the heavy codons consisting of 2 purines and 1 pyrimidine (2R + 1Y) and the light codons (2Y + 1R) within the four basic units according to the operational rules (thus the operational track) other than sequence complementation that is indeed merely an informational concern.
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The adapted Genetic Code table makes a direct link between the DNA codons in a sense strand and the primary structure of the resultant peptide.
In the case of two substitutions per codon, we considered all the mutational paths between the two codons, except those leading to a stop codon.
The CP1 gene contains a TGA codon within the heavy chain DNA fragment.
Differences between the kIsps codon and the optimized codon for (A) B. subtilis and (B) B. 20 licheniformis.
The distance between the stop codon of the upstream gene and the start codon of the downstream gene was demonstrated to be of key importance in translational coupling (Levin-Karp et al. 2013).
The IRES-Puro-pA fragment and the F5 flanked selection cassette were inserted between the stop codon and the polyA signal sequence of SFTPC gene.
The distance between the termination codon of the third HIC uORF and the initiation codon of the HIC ORF is less than 40 nt.
B: Relationship between the 3′ codon context among X.
An 8-nt overlap occurred between the termination codon of ORF1b and the initiation codon of ORF2.
istA- and istB-like sequences overlap between the stop codon of istA and the start codon of istB.
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com