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Genome comparison between the genomic sequence of strain 8081 [ 12] and a high-quality whole-genome sequence of strain WA-314, presented in this study, allowed the identification of putative virulence factors which may account for the different in vivo phenotypic behavior of these two 1B/O:8 strains.
The 3,432 contigs which did not match the Musa genome may be due to differences between the genomic sequence of DH-Pahang and Harichhal varieties or transposable elements, experiment artefacts, or mis-prediction of genes in DH-Pahang.
Spliced alignments were only considered if 75% (score >0.75) or more bases could be aligned between the genomic sequence and a probe set.
The similarity-based methods [9, 13 15, 21, 23, 38, 41, 53] make use of similarity information between the genomic sequence and a fully annotated transcript sequence, such as cDNA, EST or protein, in order to accomplish the gene prediction task.
The switch from attB to genomic sequence near the TTG core and the detectable sequence identity between the genomic sequence and attP confirmed ФC31-mediated integration at genomic pseudo-attP sites.
The changes are based on reinterpretations of the original sequencing trace data, often done because there are mismatches between the genomic sequence and aligned EST sequence.
Similar(51)
In summary, we have performed a three-way comparison between the genomic sequences of three strains of M. haemolytica.
The overlap between the genomic sequences thus obtained and their respective cDNA templates confirmed the identity of the newly generated fragments.
The distribution of Trem elements varied between the genomic sequences characterized as belonging to P. brasiliensis (S1 and PS2) and P. lutzii.
In spite the genomic homology observed among the P. aeruginosa Mu-like phages analyzed here, a BLASTn comparison between the genomic sequences of PaMx73 and coliphage Mu [ 13] revealed no significant sequence similarity.
Comparison between the genomic sequences of perennial ryegrass-associated endophytes and reference gene sequences corresponding to the MT idiomorphs, MTA (mtaA, mtaB, mtaC) and MTB (mtbA), revealed the presence of a single idiomorph in all strains.
More suggestions(11)
between the genomic relationship
between the nonredundant sequence
between the genomic organization
between the genomic location
between the genomic interval
between the actual sequence
between the transmitted sequence
between the genomic termini
between the genomic distribution
between the dna sequence
between the gene sequence
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