Sentence examples for between the contigs based from inspiring English sources

For each reference genome a fitness matrix is computed giving distances between the contigs, based on their BLAST matches.

For each mate pair library, we estimate the mean insert size gmean and the insert size range [gmin, gmax] and using these values we compute minimum and maximum suggested distances between the contigs based on each mate pair.

Alignments between the in silico maps of the rice chromosome 1 sequence pseudomolecules and the optical maps can easily reveal the gap sizes between the contigs based on where the consecutive "Ns" located, and the gap sizes are also shown in Figure 6 based on the measurements of the optical maps.

We now sort the contigs based on their best scores.

A natural strategy to devise an 'optimal' linear ordering of the contigs, based on one or several related reference genomes, works in three steps: At first, all similar regions between the contigs and each reference genome are determined.

The gaps were closed by first analysing the contig graph, which presents the connections between contigs, based on the repeat information present in the reads.

Hierarchical algorithms attempt to group the differentially expressed contigs based on the expression profile of these contigs in the libraries.

This script then returns a file listing the nominal coverage of all contigs, based on the contig length, read length, and number of reads aligned to each contig.

The Hybrid Scaffold software first creates hybrid in silico/consensus genome map contigs based on an alignment between the two.

To avoid repetitive counting of overlapping nucleotides common to more than one sequence, PHREDPHRAP assembled sequences into contigs based on overlap regions between sequences.

Gaps between the contigs were filled by PCR.